Dependency CheckΒΆ

DQuality Data Dependency check example. (Download file: hdf_dependency_check.py)

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#!/usr/bin/env python
# -*- coding: utf-8 -*-

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"""
Please make sure the installation :ref:`pre-requisite-reference-label` are met.

This script is specific for beamline 32id.

This example takes two mandatory parameters:
instrument: a string defining the detector that will be used. User can enter one of these choices:
'nanotomo', 'microtomo'.
The instrument determines a configuration file that will be used.
file: a file to be verified for dependencies according to schema.

This script calls dependency_check verifier.

"""
import sys
import os
import argparse
from dquality.check import hdf_dependency as dependency_check
from os.path import expanduser

def main(arg):

    parser = argparse.ArgumentParser()
    parser.add_argument("instrument", help="instrument name, name should have a matching directory in the .dquality folder")
    parser.add_argument("fname", help="file name to do the tag dependencies checks on")

    args = parser.parse_args()
    instrument = args.instrument
    fname = args.fname

    home = expanduser("~")
    conf = os.path.join(home, ".dquality", instrument)

    bad_indexes = dependency_check(conf, fname)
    return bad_indexes


if __name__ == "__main__":
    main(sys.argv[1:])